Publications

1. Exponential trajectories, cell size fluctuations and the adder property in bacteria follow from simple chemical dynamics and division control
   P.P. Pandey, H. Singh and S. Jain, bioRxiv 487504, DOI:10.1101/487504 (2019)
2. Feedbacks from the metabolic network to the genetic network reveal regulatory modules in E. coli and B. subtilis
   S. Kumar, S. Mahajan and S. Jain, PLoS ONE 13(10): e0203311, DOI:10.1371/journal.pone.0203311 (2018)
3. Modeling the cost and benefit of proteome regulation in a growing bacterial cell
   P. Sharma, P.P. Pandey and S. Jain, Phys. Biol. 15 046005, DOI:10.1088/1478-3975/aabe43 (2018)
4. Analytic derivation of bacterial growth laws from a simple model of intracellular chemical dynamics
   P.P. Pandey and S. Jain, Theory BioSci. 135:121, DOI:10.1007/s12064-016-0227-9 (2016)
5. Genome-wide analysis of methotrexate pharmacogenomics in rheumatoid arthritis shows multiple novel risk variants and leads for TYMS regulation
   Sabyasachi Senapati, Shalini Singh, Mitashree Das, Ashok Kumar, Rajiva Gupta, Uma Kumar, Sanjay Jain, Ramesh C Juyal, B. K ThelmaArthritis & Rheumatism, 2013, DOI:10.1002/art.38110.
6. Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis
   Garima Juyal, Sapna Negi, Ajit Sood, Aditi Gupta, Pushplata Prasad, Sabyasachi Senapati, Jacques Zaneveld, Shalini Singh, Vandana Midha, Suzanne van Sommeren, Rinse K Weersma, Jurg Ott, Sanjay Jain, Ramesh C Juyal, B. K Thelma Arthritis & Rheumatism, 2013, DOI:10.1002/art.38110.
7. A genome-wide association study reveals ARL15, a novel non-HLA susceptibility gene for Rheumatoid arthritis in north Indians
   Sapna Negi, Garima Juyal, Sabyasachi Senapati, Pushplata Prasad, Aditi Gupta, Shalini Singh, Sujit Kashyap, Ashok Kumar,Uma Kumar, Rajiva Gupta, Satbir Kaur, Suraksha Agrawal, Amita Aggarwal, Jurg Ott, Sanjay Jain, Ramesh C Juyal, B. K ThelmaArthritis & Rheumatism, 2013, DOI:10.1002/art.38110.
8. Bistability in a model of early B cell receptor activation and its role in tonic signaling and system tunability
   Srikanth Ravichandran, Kanury V. S. Rao and Sanjay Jain, Mol. BioSyst., 9, 2498-2511, (2013). DOI: 10.1039/C3MB70099B.
9. Flux-based classification of reactions reveals a functional bow-tie organization of complex metabolic networks
   Shalini Singh, Areejit Samal, Varun Giri,Sandeep Krishna, Nandula Raghuram, and Sanjay Jain, Phys. Rev. E 87, 052708 (2013). DOI:10.1103/PhysRevE.87.052708.
10. The origin of large molecules in primordial autocatalytic reaction networks
    V. Giri and S. Jain, (2012) 39. PLoS One 7(1):e29546. DOI:10.1371/journal.pone.0029546.
11. Diversity sustains an evolving network
    R. Mehrotra, V. Soni and S. Jain, Journal of the Royal Society Interface doi:10.1098/rsif.2008.0412 (2008).
12. The regulatory network of E. coli metabolism as a Boolean dynamical system exhibits both homeostasis and flexibility of response
    A. Samal and S. Jain, BMC Systems Biology 2:21 (2008).
13. A universal power law and proportionate change process characterize the evolution of metabolic networks
    S. Singh, A. Samal, V. Giri, S. Krishna, N. Raghuram and S. Jain, The European Physical Journal B 57 (2007) 75-80.
14. Can we recognize an innovation?: Perspective from an evolving network model
    S. Jain and S. Krishna, in Econophysics & Sociophysics: Trends & Perspectives, edited by B. K. Chakrabarti et al. (Wiley-VCH, Weinheim, 2006), p. 561-592.
15. Low degree metabolites explain essential reactions and enhance modularity in biological networks
    A. Samal, S. Singh, V. Giri, S. Krishna, N. Raghuram and S. Jain, BMC Bioinformatics 7:118 (2006).
16. Evolutionary mechanisms of organization in complex systems
    V. S. Borkar, S. Jain and G. Rangarajan, in Mathematical Models for Bioengineering and Probabilistic Systems, edited by J. C. Misra (Narosa, New Delhi, 2005), p. 323-350.
17. The fast tumble signal in bacterial chemotaxis
    S. Khan, S. Jain, G. P. Reid, and D. R. Trentham, Biophys. J. 86 (2004) 4049-4058.
18. Collective behaviour and diversity in economic communities: Some insights from an evolutionary game
    V. S. Borkar, S. Jain and G. Rangarajan, in The Application of Econophysics, edited by H. Takayasu (Springer-Verlag, Tokyo, 2003), p. 330.
19. Graph theory and the evolution of autocatalytic sets
    S. Jain and S. Krishna, in Handbook of Graphs and Networks: From the Genome to the Internet, edited by S. Bornholdt and H. G. Schuster (Wiley, Berlin, 2003), p. 355-395.
20. Large extinctions in an evolutionary model: The role of innovation and keystone species
    S. Jain and S. Krishna, Proc. Natl. Acad. Sci. (USA) 99 (2002) 2055-2060.
21. Crashes, recoveries, and ‘core-shifts’ in a model of evolving networks
    S. Jain and S. Krishna, Phys. Rev. E 65 (2002) 026103.
22. A model for emergence of cooperation, interdependence, and structure in evolving networks
    S. Jain and S. Krishna, Proc. Nat. Acad. Sci. (USA) 98 (2001) 543-547.
23. Emergence and growth of complex networks in adaptive systems
    S. Jain and S. Krishna, Computer Phys. Comm. 121-122 (1999) 116-121.
24. Evolutionary games with two time scales
    V. S. Borkar, S. Jain and G. Rangarajan, Physica D125 (1999) 155-166.
25. Generalized replicator dynamics as a model of specialization and di-versity in societies
    V. S. Borkar, S. Jain and G. Rangarajan, Adv. Complex Syst. 1 (1998) 325-359.
26. Autocatalytic sets and the growth of complexity in an evolutionary model
    S. Jain and S. Krishna, Phys. Rev. Lett. 81 (1998) 5684-5687.
27. Dynamics of individual specialization and global diversification in communities
    V. S. Borkar, S. Jain and G. Rangarajan, Complexity, Vol. 3, No. 3 (1998) 50-56.
28. Complex adaptive systems: Some research issues
    S. Jain (unpublished report)
29. Absence of initial singularities in superstring cosmology
    S. Jain, J. Astrophys. Astr. 18 (1997) 363-379, gr-qc/9708018.
30. Universal correlations in random matrices: Quantum chaos, the 1/r² integrable model, and quantum gravity
    S. Jain, Mod. Phys. Lett. A11 (1996) 1201.
31. Dyson-Schwinger loop equations of the two-matrix model: universal correlations in quantum chaos
    N. Deo, S. Jain and B.S. Shastry, Phys. Rev. E52 (1995) 4836.
32. Symmetry breaking in the double-well hermitian matrix models
    R. Brower, N. Deo, S. Jain and C-I Tan, Nucl. Phys. B405 (1993) 166.
33. Baby universes in 2d quantum gravity
    J. Ambjorn, S. Jain and G. Thorleifsson, Phys. Lett. B307 (1993) 34.
34. Observing baby universes in 4d quantum gravity
    J. Ambjorn, S. Jain, J. Jurkiewicz and C. Kristiansen, Phys. Lett. B305 (1993) 208.
35. World-sheet geometry and baby universes in 2-d quantum gravity
    S. Jain and S.D. Mathur, Phys. Lett. B286 (1992) 239.
36. The effect of topology on the thermodynamic limit for a string gas
    N. Deo, S. Jain, O Narayan, and C-I Tan, Phys. Rev. D45 (1992) 3641.
37. Multiband structure and critical behavior of matrix models
    K. Demeterfi, N. Deo, S. Jain, and C-I Tan, Phys. Rev. D42 (1990) 4105.
38. The ideal gas of strings
    N. Deo, S. Jain and C-I Tan, Proceedings of the International Colloquium on Modern Quantum Field Theory held in Bombay, January 1990, edited by S. Das, A. Dhar, S. Mukhi, A. Raina, and A. Sen (World Scientific, 1991).
39. Statistical mechanics of strings at high energies in compact and non-compact spaces
    N. Deo, S. Jain and C-I Tan, Proceedings of the Symposium on Formation and Evolution of Cosmic Strings held in Cambridge, July 1989, edited by G.W. Gib-bons, S.W. Hawking and T. Vachaspati (Cambridge University Press, 1990).
40. String distributions above Hagedorn energy density
    N. Deo, S. Jain and C-I Tan, Phys. Rev. D40 (1989) 2626.
41. Strings at high energy densities and complex temperature
    N. Deo, S. Jain and C-I Tan, Phys. Lett. B220 (1989) 125.
42. String field theory from Weyl invariance
    S. Jain and A. Jevicki, Phys. Lett. B220 (1989) 379.
43. Conformally invariant field theory in two dimensions and strings in curved spacetime (Ph.D. thesis)
    S. Jain, Int. J. Mod. Phys. A 3 (1988) 1759.
44. Perturbatively renormalized vertex operator, highest weight representations of Virasoro algebra, and string dynamics in curved spacetime
    S. Jain, G. Mandal and S.R. Wadia, Phys. Rev. D35 (1987) 3116.
45. Virasoro conditions, vertex operators and string dynamics in curved space
    S. Jain, G. Mandal and S.R. Wadia, Phys. Rev. D35 (1987) 778.
46. Covariant strings and 2-d conformally invariant field theory
    S. Jain, Proceedings of the Winter School on Strings, Lattice Gauge Theory and High Energy Phenomenology held in Panchgani, January 1986, edited by V. Singh and S.R. Wadia (World Scientific, 1987).
47. Conformal invariance and string theory in compact space: bosons
    S. Jain, R. Shankar and S.R. Wadia, Phys. Rev. D32 (1985) 2713.
48. Large N baryons: collective coordinates of the topological soliton in the SU(3) chiral model
    S. Jain and S.R. Wadia, Nucl. Phys. B258 (1985) 713.